Quickest 2h 56min
There are 1 train company operating 3 routes - TER 3, TGV 522, FR-830, 1 bus from Lyon to Besançon. The cheapest train costs $46 and is 3h 44min.
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There are 3 ways to travel from Lyon to Besançon. 2 trains, 1 bus and 1 by car are possible between the two areas. The by car from Lyon to Besançon is the cheapest. The by car from Lyon to Besançon is the fastest. The train operated by SNCF running from Lyon Gorge de Loup to Besançon Viotte is the most convenient.
It's important to check each mode when booking your ticket so that you can find the best method for you. The cost of each type varies differently, so be sure to use Faretrotter to keep an eye out!