Quickest 1h 28min
There are 2 ferry companies operating from Heraklion to Anafi, 1 flight from Heraklion to Anafi. The cheapest ferry costs $129 and is 1h 45min.
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There are 2 ways to travel from Heraklion to Anafi. 3 ferries and 1 flight are possible between the two areas. The ferry operated by Sea Jets running from Heraklion to Santorini is the cheapest. The ferry operated by Sea Jets running from Heraklion to Thira (Santorini) is the fastest. The ferry operated by Anek Lines running from Heraklion to Anafi is the most convenient.
It's important to check each mode when booking your ticket so that you can find the best method for you. The cost of each type varies differently, so be sure to use Faretrotter to keep an eye out!